Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs55780517 chr3:139269531 C/T 5.24E-5 496 31.47 34 19.32 KM Plot
THCA rs55794169 chr7:43950913 T/C 1.63E-9 500 31.27 33.38 31.03 KM Plot
THCA rs55794726 chr11:88095657 C/G 0 494 31.28 35.53 5.23 KM Plot
THCA rs55798571 chr10:81617563 T/C 9.58E-10 486 31.72 30.78 14.52 KM Plot
THCA rs55800282 chr19:9833530 A/G 4.46E-6 501 31.45 32.9 32.9 KM Plot
THCA rs55816457 chr2:87021123 G/A 7.33E-8 498 32.6 28.23 32.1 KM Plot
THCA rs55817008 chr2:87025460 G/A 5.89E-8 503 32.77 28.23 32.1 KM Plot
THCA rs55817881 chr3:139265086 T/A 4.35E-10 502 31.47 33.97 19.32 KM Plot
THCA rs55820039 chr11:123528438 C/T 4.12E-5 502 31.92 28.28 24.67 KM Plot
THCA rs55820109 chr11:123526095 T/C 1.75E-5 497 31.78 29.37 30.42 KM Plot
THCA rs55834130 chr3:139269727 A/C 4.83E-5 500 31.53 33.97 19.32 KM Plot
THCA rs55835925 chr3:53919080 T/G 3.47E-6 495 31.67 31.85 24.75 KM Plot
THCA rs55851701 chr19:33369322 G/A 2.87E-5 501 31.43 34.43 32.93 KM Plot
THCA rs55914342 chr19:9824447 A/T 4.26E-6 503 31.42 33.53 32.9 KM Plot
THCA rs55917516 chr8:58007453 C/A 7.58E-6 500 31.38 33.27 36.93 KM Plot